Independent - accommodation in San Diego
More than just hotels
Apartments, cabins, holiday rentals and more, plus millions of reviews from Aussie & Kiwi travellers
Flexibility matters
24/7 support, so you can book with confidence
Relax with our Price Promise
Find a lower price on a hotel or package online, before your stay, and we'll refund the difference^
Check hotel availability in San Diego
Featured San Diego Independent accommodation

The Dana on Mission Bay
1710 W Mission Bay Dr, San Diego, CA
The price is NZ$319 per night
NZ$319
includes taxes & fees
20 Apr - 21 Apr
Stay at this 3.5-star business-friendly hotel in San Diego. Enjoy 2 outdoor pools, a marina, and 2 hot tubs. Our guests praise the pool and the restaurant in our reviews. Popular attractions Mission Beach and Mission Bay are located nearby.
Pool
Hot tub
Free cancellation
Reserve now, pay when you stay

Legacy Resort Hotel & Spa
875 Hotel Circle South, San Diego, CA
The price is NZ$319 per night
NZ$319
includes taxes & fees
20 Apr - 21 Apr
Stay at this 4-star spa hotel in San Diego. Enjoy free WiFi, a full-service spa, and breakfast (surcharge). Our guests praise the pool and the restaurant in our reviews. Popular attractions San Diego Zoo and Balboa Park are located nearby.
Pool
Hot tub
Free cancellation
Reserve now, pay when you stay

Bay Club Hotel & Marina
2131 Shelter Island Dr, San Diego, CA
The price is NZ$302 per night
NZ$302
includes taxes & fees
11 May - 12 May
Stay at this 3.5-star business-friendly hotel in San Diego. Enjoy free WiFi, a marina, and a health club. Our guests praise the breakfast and the restaurant in our reviews. Popular attractions USS Midway Museum and Port of San Diego are located nearby.
Pool
Hot tub
Free cancellation
Reserve now, pay when you stay

Lafayette Hotel & Club
2223 El Cajon Blvd, San Diego, CA
The price is NZ$426 per night
NZ$426
includes taxes & fees
20 Apr - 21 Apr
Stay at this 4-star business-friendly hotel in San Diego. Enjoy free WiFi, 2 restaurants, and 3 bars/lounges. Our guests praise the helpful staff in our reviews. Popular attractions San Diego Zoo and Balboa Park are located nearby.
Pool
Pet-friendly
Free cancellation
Reserve now, pay when you stay

Handlery Hotel
950 Hotel Cir N, San Diego, CA
The price is NZ$225 per night
NZ$225
includes taxes & fees
21 Apr - 22 Apr
Book a stay at this business-friendly hotel in San Diego. Enjoy free WiFi, 2 restaurants, and 2 bars/lounges. Our guests praise the pool and the bar in our reviews. Popular attractions San Diego Zoo and Balboa Park are located nearby.
Pool
Hot tub
Free cancellation
Reserve now, pay when you stay

California Suites Hotel
5415 Clairemont Mesa Blvd, San Diego, CA
The price is NZ$187 per night
NZ$187
includes taxes & fees
20 Apr - 21 Apr
Book a stay at this business-friendly hotel in San Diego. Enjoy free WiFi, free parking, and a 24-hour front desk. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Mission Bay and Westfield UTC are located nearby.
Pool
Hot tub
Free cancellation
Reserve now, pay when you stay

Paradise Point Resort & Spa
1404 Vacation Rd, San Diego, CA
The price is NZ$484 per night
NZ$484
includes taxes & fees
20 Apr - 21 Apr
Book a stay at this beach resort in San Diego. Enjoy free WiFi, 5 outdoor pools, and a full-service spa. Our guests praise the pool and the helpful staff in our reviews. Popular attractions Mission Bay and Mission Beach are located nearby.
Pool
Hot tub
Free cancellation
Reserve now, pay when you stay

Bahia Resort Hotel
998 W Mission Bay Dr, San Diego, CA
The price is NZ$405 per night
NZ$405
includes taxes & fees
29 Apr - 30 Apr
Book a stay at this beach resort in San Diego. Enjoy free parking, a beach locale, and breakfast (surcharge). Our guests praise the pool and the restaurant in our reviews. Popular attractions Mission Beach and Mission Bay are located nearby.
Pool
Hot tub
Free cancellation
Reserve now, pay when you stay

La Pensione Hotel
606 West Date Street, San Diego, CA
The price is NZ$288 per night
NZ$288
includes taxes & fees
29 Apr - 30 Apr
Stay at this 3-star business-friendly hotel in San Diego. Enjoy free WiFi, a 24-hour fitness center, and a 24-hour front desk. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Port of San Diego and USS Midway Museum are located nearby.
Free WiFi
Restaurant
Free cancellation
Reserve now, pay when you stay

Margaritaville Hotel San Diego Gaslamp Quarter
435 6th Ave, San Diego, CA
The price is NZ$442 per night
NZ$442
includes taxes & fees
20 Apr - 21 Apr
Stay at this 4-star hotel in San Diego. Enjoy a rooftop terrace, breakfast (surcharge), and a 24-hour fitness center. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Petco Park and Port of San Diego are located nearby.
Pool
Pet-friendly
Free cancellation
Reserve now, pay when you stay

The Sofia Hotel
150 W Broadway, San Diego, CA
The price is NZ$267 per night
NZ$267
includes taxes & fees
28 Apr - 29 Apr
Stay at this 3.5-star spa hotel in San Diego. Enjoy free WiFi, a full-service spa, and room service. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions Port of San Diego and USS Midway Museum are located nearby.
Spa
Pet-friendly
Free cancellation
Reserve now, pay when you stay

GreenTree Inn San Diego Mission Bay
4540 Mission Bay Drive, San Diego, CA
The price is NZ$202 per night
NZ$202
includes taxes & fees
22 Apr - 23 Apr
Book a stay at this business-friendly hotel in San Diego. Enjoy free breakfast, free WiFi, and free parking. Our guests praise the breakfast and the helpful staff in our reviews. Popular attractions Mission Bay and Mission Beach are located nearby.
Pool
Breakfast included
Free cancellation
Reserve now, pay when you stay
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Independent Accommodation in San Diego
Search for hotels in San Diego on Wotif. You can easily find your hotels in San Diego using one of the methods below:
- View our selection of featured hotels in San Diego
- Use the map to find hotels in the San Diego neighbourhood you prefer
- Use the filters to see hotels in a specific area of San Diego, select a specific theme, brand, or hotel class from basic to luxury hotels in San Diego
- Enter your travel dates to view the best deals on hotels in San Diego - while they last
New reviews! Best hotels in San Diego

Wotif Verified Review
5 / 5
The 5 of us enjoyed our stay in the suite. Breakfast was fantastic.
A verified traveller stayed at Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
Posted 22 hours ago
Neighbourhoods
Nearby cities
Near an airport
Near an Attraction
Hotel themes
More accommodations
Hotel brands
More destinations for you
Hotels
Santa Barbara AccommodationFamily Hotels in AnaheimPalm Springs AccommodationTahoe City AccommodationGroveland AccommodationHuntington Beach AccommodationLake Arrowhead AccommodationLa Jolla AccommodationSouth Lake Tahoe AccommodationAnaheim AccommodationPalo Alto AccommodationWeed AccommodationLaguna Beach AccommodationNapa AccommodationMariposa AccommodationBig Sur AccommodationFullerton AccommodationSanta Cruz AccommodationMonterey AccommodationSamoa AccommodationCosta Mesa AccommodationBuena Park AccommodationSan Luis Obispo Accommodation
Flights
^Eligibility requirements and conditions apply